2022
Gauthier J*, Borer M*, Toussaint E FA, Bilat J, Kippenberg H, Alvarez N. Is the genus Oreina (Coleoptera: Chrysomelidae) monophyletic? – A museomic approach to investigate the evolutionary history of alpine leaf beetles. in revision
Landry B, Bilat J, Hayden J, Solis M A, Lees D C, Alvarez N, Leger T, Gauthier J. The identity of Argyria lacteella (Fabricius, 1794) (Lepidoptera, Pyraloidea, Crambinae), synonyms, and related species using morphology and DNA capture in type specimens. minor revision Zookeys
Gauthier J, Meier J, Legeai F, McClure M, Whibley A, Bretaudeau A, Boulain H, Parrinello H, Mugford S, Durbin R, Zhou C, McCarthy S, Wheat C, Piron-Prunier F, Monsempes C, François M, Jay P, Nous C, Persyn E, Jacquin-Joly E, Meslin C, Montagné N, Lemaitre C, Elias M (2022). First chromosome scale genomes of ithomiine butterflies (Nymphalidae: Ithomiini): comparative models for mimicry genetic studies. accepted in Molecular Ecology Resources.
Szenteczki M A, Godschalx A L, Gauthier J, Gibernau M, Rasmann S, Alvarez N (2022). Transcriptomic analysis of deceptively pollinated Arum maculatum (Araceae) reveals association between terpene synthase expression in floral trap chamber and species-specific pollinator attraction. G3 Genes Genomes Genetics. 12:9. doi:10.1093/g3journal/jkac175
Pavlek M*, Gauthier J*, Tonzo V, Bilat J, Arnedo M A, Alvarez N (2022). Life-history traits drive spatial genetic structuring in Dinaric cave spiders. Frontiers in Ecology and Evolution. doi:10.3389/fevo.2022.910084
Pouchon C, Gauthier J, Pitteloud C, Claudel C, Alvarez N (2022). Phylogenomic study of Amorphophallus (Alismatales; Araceae): when plastid DNA gene sequences help to resolve the backbone sub-generic delineation. Journal of Systematics and Evolution. doi:10.1111/jse.12910
2021
Emmanuel FA Toussaint*, Jérémy Gauthier*, Julia Bilat, Conrad PDT Gillett, Harlan M Gough, Håkan Lundkvist, Mickael Blanc, Carlos P Muñoz-Ramírez, Nadir Alvarez. HyRAD-X exome capture museomics unravels giant ground beetle evolution. GBE. link:https://doi.org/10.1093/gbe/evab112
Florence Piron-Prunier, Emma Persyn, Fabrice Legeai, Melanie McClure, Camille Meslin, Stéphanie Robin, Susete Alves-Carvalho, Ammara Mohammad, Corinne Blugeon, Emmanuelle Jacquin-Joly, Nicolas Montagné, Marianne Elias*, Jérémy Gauthier*. Comparative transcriptome analysis at the onset of speciation in a mimetic butterfly, the Ithomiini Melinaea marsaeus. JEB. link:https://doi.org/10.1111/jeb.13940
Gauthier J., Boulain H., … , Drezen J.-M. Chromosomal scale assembly of parasitic wasp genome reveals symbiotic virus colonization. Communications Biology. link:https://www.nature.com/articles/s42003-020-01623-8
2020
Ledent A.§, Gauthier J.§, Pereira M., Overson R., Laenen B., Mardulyn P., Gradstein R., De Haan M., Ballings P., Van Der Beeten I., Zartman C., Vanderpoorten A. What do tropical cryptogams reveal? Strong genetic structure in Amazonian bryophytes. New Phytologist. link:https://doi.org/10.1111/nph.16720
Gauthier J., Mouden C., Suchan T., Alvarez N., Arrigo N., Riou C., Lemaitre C. and Peterlongo P. DiscoSnp-RAD: de novo detection of small variants for population genomics. PeerJ. link:https://www.biorxiv.org/content/early/2017/11/09/216747
Gauthier J.§, Pajkovic M.§, Neuenschwander S., Kaila L., Schmid S., Orlando L., Alvarez N. Museomics identifies genetic erosion in two butterfly species across the 20th century in Finland. Molecular Ecology Resources. link:https://doi.org/10.1111/mec.15403
Gauthier J., de Silva D. L, Gompert Z., Whibley A., Houssin C., Le Poul Y., McClure M., Lemaitre C., Legeai F., Mallet J. and Elias M. Contrasting genomic and phenotypic outcomes of hybridization between pairs of mimetic butterfly taxa across a suture zone. Molecular Ecology. link:https://doi.org/10.1111/mec.15403
2019
Branca A., Le Ru B. P., Calatayud P-A., Obonyo J., Muzyoka B., Capdevielle-Dulac C., Kaiser-Arnauld L., Silvain J-F., Gauthier J., Paillusson C., Gayral P., Herniou E. and Dupas S. Determinants of genetic structure of the Sub-Saharan parasitic wasp Cotesia sesamiae. Frontiers in Ecology and Evolution. 7, 309.
2018
Gauthier J., Gayral P., Le Ru B. P., Jancek S., Dupas S., Kaiser L., Gyapay G. and Herniou E. A. 2018. Genomic divergence footprints in the bracovirus of Cotesia sesamiae identified by targeted re-sequencing approach. Molecular Ecology. doi:10.1111/mec.14574 link:https://onlinelibrary.wiley.com/doi/abs/10.1111/mec.14574
Gauthier J., Drezen J.-M. and Herniou E. A. 2017. The recurrent domestication of viruses: major evolutionary transitions in parasitic wasps. Parasitology. 1-13. doi: 10.1017/S0031182017000725 link:https://www.cambridge.org/core/journals/parasitology/article/recurrent-domestication-of-viruses-major-evolutionary-transitions-in-parasitic-wasps/BE6A079B72711301755DDE6881CD9452
2017
Kaiser L., Dupas s., Branca A., Herniou E. A., Clarke C. W., Capdevielle-Dulac C., Obonyo J., Benoist R., Gauthier J., Calatayud P. A., Silvain J.-F., Le Ru B. P. 2017. The Cotesia sesamiae story: insight into host-range evolution in a Hymenoptera parasitoid and implication for its use in biological control programs. Genetica. doi:10.1007/s10709-017-9989-3 link:https://link.springer.com/article/10.1007/s10709-017-9989-3
Drezen J.-M., Josse T., Bézier A., Gauthier J., Huguet E. and Herniou E. 2017. Impact of lateral transfers on the genomes of Lepidoptera. Genes. doi:10.3390/genes8110315 link:http://www.mdpi.com/2073-4425/8/11/315
Drezen J.-M., Gauthier J., Josse T., Bézier A., Herniou E. and Huguet E. 2017. Foreign DNA acquisition by invertebrate genomes. Journal of Invertebrate Pathology. doi: 10.1016/j.jip.2016.09.004 link:https://www.sciencedirect.com/science/article/pii/S0022201116301288
2016
Eoche-Bosy D., Gauthier J., Juhel A.-S., Esquibet M., Fournet S., Grenier E. and Montarry J. 2016. Experimentally evolved populations of the potato cyst nematode Globodera pallida allow the targeting of genomic footprints of selection due to host adaptation. Plant Pathology. doi: 10.1111/ppa.12646 link:https://onlinelibrary.wiley.com/doi/10.1111/ppa.12646
2015
Pichon A., Bézier A., Urbach S., Aury J.-M., Jouan V., Ravallec M., Guy J., Cousserans F., Thézé J., Gauthier J., Demettre E., Schmieder S., Wurmser F., Sibut V., Poirié M., Colinet D., da Silva C., Couloux A., Barbe V., Drezen J.-M. and Volkoff A.-N.et al. 2015. Recurrent DNA virus domestication leading to different parasite virulence strategies. Science Advances. 1, e1501150. doi: 10.1126/sciadv.1501150 link:http://advances.sciencemag.org/content/1/10/e1501150.full
Gasmi L., Boulain H., Gauthier J., Hua-Van A., Musset K., Jakubowska A. K., Aury J.-M., Volkoff A.-N., Huguet E., Herrero S. and Drezen J.-M. 2015. Recurrent domestication by Lepidoptera of genes from their parasites mediated by bracoviruses. PLoS Genetics. 11, e1005470. doi: 10.1371/journal.pgen.1005470 link:https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1005470